Enzymes in the Environment: Activity, Ecology and Applications - Chapter 8 potx

... Soil Biol Biochem 10: 187 –191, 19 78. 8. J-M Bollag. Decontaminating soil with enzymes: An in situ method using phenolic and ani-linic compounds. Environ Sci Technol 26: 187 6– 188 1, 1992.9. H Bolton ... transforma-tions include the effect of bonding of β-d-glucosidase to a phenolic copolymer of l-tyro-sine, pyrogallol, or resorcinol (1 08) and of linking of urease to tannic acid (49,52). Sarkar and ... affecting the efficiency of interaction of the substrate and enzyme molecules. In other words, a portion of the enzyme molecules existing in the field soil may not be actively engaged in catalyzing their...

... the control. In contrast, the β-glucosidase, β-galactos-idase, and N-acetyl glucosaminidase activities decreased with the inoculation of the DAPGϩstrain(Table1).Theseresultsindicatethatsoilenzymesaresensitivetotheimpact ... would in- crease the microbial P demand.Inverse trends were found with the C and N cycle enzymes in comparison to the general trend found in the P and S cycle enzymes. The F113 (DAPGϩ) strain was ... Inc.Althoughthisstudyinvolvedtheuseofageneticallymodifiedmicrobe,themodi - cationswerenotintendedtohaveafunctionalimpact;theywereinsertedasgeneticmark-ers.Asecondstudycomparingtheeffectofthesamegeneticallymarkedstraintothatofafunctionallymodifiedstrainshowedeffectsthataremoreinteresting(36).Theaimofthisworkwastodeterminetheimpactintherhizosphereofwildtypealongwithfunction-allyandnonfunctionallymodifiedPseudomonasfluorescensstrains.Thewild-typeF113straincarriedageneencodingtheproductionoftheantibiotic2,4-diacetylphloroglucinol(DAPG),usefulinplantdiseasecontrol,andwasmarkedwithalacZYgenecassette .The firstmodifiedstrainwasafunctionalmodificationofstrainF113withrepressedproductionofDAPG,creatingtheDAPGnegativestrainF113G22.Thesecondpairedcomparisonwasanonfunctionalmodificationofwild-type(unmarked)strainSBW25,constructedtocarrymarkergenesonly,creatingstrainSBW25EeZY-6KX.Significantperturbationswererecordedintheindigenousbacterialpopulationstruc-ture;theF113(DAPGϩ)straincausedashifttowardslower-growingcolonies(Kstrate-gists)comparedwiththenon-antibiotic-producingderivative(F113G22)andSBW25strains.TheDAPGϩstrainalsosignificantlyreduced,incomparisonwiththoseoftheotherinocula,thetotalPseudomonassp.populations,butdidnotaffectthetotalmicrobialpopulations.ThesurvivalofF113andF113G22wasanorderofmagnitudelowerthanthatoftheSBW25strains.TheDAPGϩstraincausedasignificantdecreaseintheshoot-to-rootratioincomparisontothatofthecontrolandotherinoculants,indicatingplantstress.F113increasedsoilalkalinephosphatase,phosphodiesterase,andarylsulfataseac-tivities(Table2)comparedtothoseofthecontrols.Theotherinoculareducedthesameenzyme...

... Biol Bio-chem 20:927–932, 1 988 .67. RL Sinsabaugh, AE Linkins. Natural disturbance and the activity of Trichoderma viride cellu-lase complexes. Soil Biol Biochem 21 :83 5 83 9, 1 989 . 68. RL Sinsabaugh, ... each site and placed in litter bags. In using the ap-proach of Sinsabaugh et al. (73) and Jackson et al. (29), confined and in situ POM sampleswere assayed monthly for β-glucosidase, β-N-acetylglucosaminidase, ... review. Linnean Soc91:67 81 , 1 985 . 8. A-C Chamier, PA Dixon. Pectinases in leaf degradation by aquatic hyphomycetes: The en-zymes and leaf maceration. J Gen Microbiol 1 28: 2469–2 483 , 1 982 .9....

... 4, Postfach 81 2, CH-4001 Basel, Switzerlandtel: 4 1-6 1-2 6 1 -8 482 ; fax: 4 1-6 1-2 6 1 -8 89 6World Wide Webhttp:/ /www.dekker.com The publisher offers discounts on this book when ordered in bulk quantities. ... effective for both L- and D- glutamic acid. The PLP-Cu2ϩ-smectitehas acted as a ‘‘pseudoenzyme’’ wherein the PLP was active and independent of the protein matrix of the enzyme and the silicate structure ... aspartase-Ca-montmoril-lonite systems (159). Deamination of l- and d-glutamic and aspartic amino acids and oftheir DL racemic mixtures in the presence of Na-montmorillonite showed a stereoselectiv-ity...

... Inc.Currently,itisevidentthatmicroorganismsformcomplexmicrobialfoodwebsinallaquaticecosystems,andthattheiractivitiesandmetabolismsoftenaretightlycoupled and/ ormutuallyaffected(132,143,144).Therefore,itisnotsurprisingthatenzymaticpropertiesandactivitiesofdifferentcomponentscreatingthemicrobialfoodwebsinlakeecosystemshavedemonstratedcloserelationships.Severalreportshavedocumentedthestrongdependencyofbacterialsecondaryproductiononectoenzymeactivitiesofaquaticmicroorganisms(2–4,16,17,19,25, 28, 29,33,36,59).Thereoftenisasignificantcorrelationbetweenphytoplanktonprimaryproductionandactivitiesofdifferentectoenzymesinfreshwaterecosystems(25, 28, 29,33,52).Ourstudiesinlakesofdifferingdegreesofeutrophicationhaveshownmicrobialesteraseactivitytobepositivelycorrelatedtophytoplanktonprimaryproduction,bacterialsecondaryproduction,andconcentrationofdissolvedorganiccarbon(DOC)(Fig.13).Wehavefoundasignificantnegativerelationshipbetweenenzymeactivityandtheper-centageofphytoplanktonextracellularrelease(PER)ofphotosyntheticorganiccarboninthestudiedlakes.ThisnegativecorrelationbetweenPERandesteraseactivityindicatedthatenzymesynthesiswaspartiallyinhibitedinbacteriabylow-molecular-weightphoto-syntheticproductsofphytoplanktonthatwerereadilyutilizedbythesemicroheterotrophs:i.e.,catabolicrepressionofesterasesynthesiswasfoundinlakescharacterizedbyhighPERofphytoplankton(29,33).VIII.ECTOENZYMEACTIVITYANDLAKEWATEREUTROPHICATIONTheimportanceoforganicmatterasavariableforevaluatingthetrophicstatusoflakeshasbeenrecognizedsincethebeginningofthe20thcentury(145,146).Increasingconcen-trationsoforganicconstituentsinwaterarethedistinctindicatorsofacceleratedeutrophi-cationprocessesinmanylakes(147–149).OurstudiesclearlydemonstratedthatenzymeactivitiesweresignificantlypositivelyproportionaltoDOCcontentoflakes(Fig.13C).Asdescribedearlierinthischapter,severalmicrobialectoenzymesareresponsibleforrapidtransformationanddegradationofbothdissolvedorganicmatterandPOMinfresh-waterecosystems.Therefore,wehypothesizethatan‘‘enzymaticapproach’’canbeveryusefulinthestudiesoflakeeutrophication.Severalreportspointedoutthatmicrobialenzymaticactivitieswerecloselyrelatedtotheindicesofwatereutrophicationand/orthetrophicstatusofaquaticecosystems(25,27,29,31,33, 38, 52, 58, 62, 78) .Ourstudiesalongthetrophicgradientoflakes(fromoligo/mesotrophictohypereutrophiclakes[Fig.14A]supportourhypothesis(andtheassumptionsofothers)thatselectedenzymaticmicrobialactivitiesareverypracticalforarapidrecognitionofthecurrenttrophicstatusoflakes.Activitiesofalkalinephosphatase,esterase,andaminopeptidaseincreasedexponentiallyalongatrophicgradientandcorre-latedsignificantlywiththetrophicstateindexofthestudiedlakes(Fig.14B,C,D).Wealsofoundastrongrelationshipbetweenactivitiesofectoenzymesandphytoplanktonprimaryproductionintheselakes.RapidincreasesinectoenzymeactivitieswereobservedespeciallyinarangeofgraduallyeutrophiclakeswhenthevalueofCarlson’strophicstateindex(TSI)wasabove55(150)(Fig.14).Moreover, ... for the enzymes involved in the transformation and degrada-tion of polymeric substrates outside the cell membrane: ectoenzymes (19), extracellular enzymes (20), and exoenzymes (21). In this chapter, ... Inc.lakewater.Figures2Band2CshowthatectoenzymesynthesisinDOM-enrichedsampleswasnolongerrepressedwhentheconcentrationofthereadilyutilizablelowmolecular-weightmoleculesfellbelowacriticallevel,andpolymericsubstrateshadtobeusedtosupportthegrowthandmetabolismofbacteria.Similarinsituobservationsduringphyto-planktonbloomdevelopmentandbreakdownwerereportedforβ-glucosidaseactivityineutrophicLakePlußsee(24),forβ-glucosidaseandaminopeptidaseactivitiesinmeso-trophicLakeScho¨hsee(25),andforlipaseactivityineutrophicLakeMikołajskie(40).Despitethewidespreadoccurrenceofcatabolicrepression,withtheexceptionofthoseforentericbacteria,themoleculardetailsoftherepressionarepoorlyunderstood.Somestudieshaveindicatedthatcyclicadenosinemonophosphate(cAMP),togetherwithitsreceptorprotein,mayplayacentralroleincontrolofcatabolicrepression(41,42).Usingtherepressionstrategyforectoenzymesynthesis,microorganismscanavoidthewastefulproductionofinducibleenzymes,whicharenotusefulwhentheirgrowthisnotlimitedbyUDOM(3,19,24,35).B.InhibitionofActivityItisimportanttoconsiderthattherepression/derepressionofanectoenzymenotbeequatedtothereversibleinhibitionofactivity.Evenifanectoenzymeissynthesized,itsactivitymaybeinhibitedbytheaccumulationoftheendproductorbyhighconcentrationsofthesubstrate(19).Twogeneraltypesofreversibleinhibitionareknown:competitiveandnoncompetitiveinhibition.Competitiveinhibitionoccurswhenaninhibitingcompoundisstructurallysimilartothenaturalsubstrateand,bymimicry,bindstotheenzyme.Indoingso,itcompeteswithanenzyme’snaturalsubstratefortheactivesubstrate-bindingsite.Thehallmarkofcompetitiveinhibitionofmanyectoenzymes(e.g.,alkalinephosphatase,β-glucosidase,aminopeptidase)isthatitdecreasestheaffinityofanectoenzyme(anincreaseoftheapparentMichaelisconstantisobserved)forthesubstrateand,therefore,inhibitstheinitialvelocityofthereaction(Fig.3)(13,26,37).Competitiveinhibitionisreversibleandcanbeovercomebyincreasedsubstrateconcentration,andthereforethemaximumvelocity(Vmax)ofthereactionisunchanged(Fig.3A).Noncompetitive...

... ( 18, 21,35,36) and probablyalso in the extracellular release of endo -enzymes by these bacteria (37, 38) . By hydrolyzingmacromolecular linkages in an endo- fashion (i.e., hydrolyzing the nonterminal linkages in ... forchitin-hydrolyzing activity by using MUF-β-d-N, N′-diacetylchitobioside, and chitobiaseactivity was then assayed in protein extracts prepared from the positive clones. The chi-tinases of marine bacteria ... anomeric linkages (160–162). A further technical advantage is that the fluorophoresused for labeling polysaccharides (fluorescein-amine, isomer II) and peptides (4-amino-3,6-disulfo-1 , 8- naphthalic...