... 2630–2640 ª 2007 The Authors Journal compilation ª 2007 FEBS
Insights into the structure of plant a-type phospholipase D
Susanne Stumpe, Stephan Ko
¨
nig and Renate Ulbrich-Hofmann
Martin-Luther University ... cowpea
[19], and poppy [20,21].
In the present study, the first insights into the secon-
dary and tertiary structure of PLD a2 from...
... His120 and His145, and the
corresponding His101 and His126 in arginase I, were
described among the ligands for coordination of
Mn
2+
A
and Mn
2+
B
, respectively [9,24]. However, the
volume of the ... amino acid and the introduced aspartic residue at
position 149. On the other hand, as agmatine lacks
the a-carboxyl group, there would be no impediment
for its bindin...
... of the domains are shared between the disinte-
grin flavoridin and VAP1. The disulfide bond patterns
of the disintegrins and disintegrin-like domains are
different in the N-terminal region, and ... associated with the structure of the adjacent
proteinase and disintegrin-like domains and the pack-
ing of those two domains together in the structure.
Compari...
... connected to the rest of the words
by a single incoming dependency arc. The rela-
tions among the words in a chunk are not marked.
Thus, in a dependency tree in HyDT, each node is
a chunk and the edge ... unlabeled
directed graph D = (X, Y ) where X is a set of
nodes and Y is a set of directed edges on these
nodes. x
i
→ x
j
denotes an edge from x
i
to x
j
,
(x
i
, x
j
)...
... (residues 20–564), and the model is
composed of residues 25–540. The overall structure of the
model of IPU and the mutated residues in this study are
shown in Fig. 3. To elucidate the mechanism of ... N-terminal and b-he lical
domains participate in binding of the polysaccharide,
pullulan.
Comparison of the active sites of the model of IPU
and Dex49A...
... loop indicated by the letter a.
Fig. 5. Scheme of the binuclear manganese cluster and the localization
of the side-chains of Asp153 and Asn153 in the modelled structures of
wild-type and D1 53N ... the sequences of 1CEV and 1RLA and pasted into the
structural alignment. The alignment was then corrected by
hand. Since the sequences of the two argina...
... FEBS
glycoproteins from the culture media and HCC patient
sera. Of these, 60 proteins were discarded, as they
were also identified from the sera of HVs. To estimate
the abundance of the remaining candidates in ... release of
the glycan. Finally, these
18
O-tagged peptides are
identified by LC ⁄ MS [21]. This technology yields
high-throughput identification, and provides a...
... after the addition of ISP and Qcr10p).
On the other hand, in the transition from the 500 kDa
band to the 670 kDa band, a structural rearrangement
of the bc
1
complex may occur due to the binding of ... sporulated and
tetrads were dissected to obtain the double deletion
strains DQCR6 ⁄ DQCR9, DQCR9 ⁄ DQCR10, DISP ⁄ DQCR6,
DISP ⁄ DQCR9 and DISP ⁄ DQCR10. The select...
... have been
identified and analysed, which should enable the exper-
imentalists in the field to direct their research more
appropriately. The significance of this study could be
in the field of: (a) hcHAT ... catalytic residues are indi-
cated by small yellow boxes. The individual structural parts of the proteins, i.e. the N-terminal and the transmembrane segments, domain A...