interaction between climate change and greenhouse gas emissions from managed ecosystems in canada
PREDICTIVE TOXICOLOGY - CHAPTER 3 pps
... built using Linear Discriminant Analysis based on the first two (m ¼ 2) principal components of the patients of a training set containing 38 patients The line in this figure represents the linear ... using single gene features might not result in the best predictive performance Indeed, in general, a class distinction is not determined by the activity of a single gene, but rather by the interaction ... expression levels (intensity in the red channel=intensity in the green channel) 6) Storage of results in a database 7) Data mining 2.2 Sources of Variation In a microarray experiment, changes in gene expression...
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Báo cáo y học: "Computational Biology and Bioinformatics" doc
... and ARF4 and Aux/IAA signaling during fiber elongation and leaf expansion Interestingly, the expression levels of miR159b, 160a, 165a and 166a decreased in the ovules from DPA to +3 DPA and in ... encoding a predicted serine/threonine kinase, and between Gh-miR2949 and its target (TC101917) encoding a putative endosomal protein Interestingly, Gh-miR2949 accumulated at higher levels in ovules ... expression levels (fold changes) were calculated using the standard in each reaction vation and technical advice, and Thomas Bushart and Mahek Mehta for assistance in cloning and sequencing cotton DNA...
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Computational Biology and Applied Bioinformatics
... involved in ATP binding, ATP hydrolysis, and coordinating a conformational change with ATP hydrolysis The figure also shows the region of DnaC near the N-terminus that is involved in interaction ... Like the arginine finger residue, this arginine is thought to coordinate a change in protein conformation with nucleotide hydrolysis Fig Structural organization of the AAA+ domain, and the locations ... 2008) In comparison, oligomeric proteins in the remaining clades form closed rings A characteristic feature of proteins in the initiator clade is the presence of two α helices between the β2 and...
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Computational Intelligence and Pattern Analysis in Biology Informatics potx
... Bhattacharyya, and Nagasuma R Chandra Characterization of Conformational Patterns in Active and Inactive Forms of Kinases using Protein Blocks Approach 169 G Agarwal, D C Dinesh, N Srinivasan, and Alexandre ... dealing with uncertainty, partial truth and imprecision, efficient linear and/ or sublinear scalability, incremental approaches to knowledge discovery, and increased level and intelligence of interactivity ... increased complexity of the intermodule interactions and specifying, designing, and building fully integrated models is complex 1.4 EMERGING TRENDS IN CI This section introduces a few new members...
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algebraic statistics for computational biology - lior pachter and bernd sturmfels
... and the result is in your hands It offers an accurate snapshot of what happened during our seminars at UC Berkeley in 2003 and 2004 Nothing more and nothing less The choice of topics is certainly ... set (1.61) is a triple consisting of two distinct elements a and a′ in Xi ∈A Σi , two distinct elements b and b′ in Xj ∈B Σj , and an element c in Xk ∈C Σk The independence condition A ⊥ B | ... biologists might benefit from adding the techniques described in Chapter to their tool box In addition, we have found the algebraic point of view to be useful in unifying and developing many computational...
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SYSTEMS AND COMPUTATIONAL BIOLOGY – BIOINFORMATICS AND COMPUTATIONAL MODELING ppt
... ligands finding interaction relationships among the objects, engineering the networks and objects to understand and manipulate the regulatory mechanisms and integrating various omes and omics ... molecular, cellular and systems biology studies; these efforts are projected to result in very interesting and important research findings in the coming years Good findings in a new research area ... Information: Combining Experimental and Computational Approaches Jestin Jean-Luc and Lafaye Pierre Institut Pasteur France Introduction While protein functions such as binding or catalysis remain very...
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Báo cáo y học: " Bioinformatics and Computational Biology, University of North Carolin" ppsx
... Materials and methods Murine and human tumors The murine tumor samples were obtained from multiple participating investigators, who all maintained the mice and harvested the murine tumors in the ... activating 22 Snail homolog RIKEN cDNA C330012H03 TIMP1 Diphtheria toxin receptor AKR1B8 Vimentin RAS p21 protein activator Laminin B1 subunit RCN3 FK506 binding protein 10 FK506 binding protein ... CUB domain, EGF-like Tmem25; transmembrane protein 25 Wwp1; WW domain containing E3 ubiquitin protein ligase Inpp4b; inositol polyphosphate-4-phosphatase, type II Chchd5 Sytl2; synaptotagmin-like...
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Báo cáo y học: "Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health" pptx
... identify binding sites of FoxA1 in MCF7 cells, NRSF (neuron-restrictive silencer factor) in Jurkat T cells [8], and CTCF (CCCTC-binding factor) in CD4+ T cells [5] (summarized in Table S1 in Additional ... ChIP versus control in 10 kb windows across the genome Each dot represents a 10 kb window; red dots are windows containing ChIP peaks and black dots are windows containing control peaks used for ... modeling of 'd' and tag shifting by d/2 to putative protein-DNA interaction site; and the use of a dynamic λlocal to capture local biases in the genome To evaluate the effectiveness of tag shifting...
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Post-Harvest Biology and Technology of Citrus Fruits
... (2-4 at 5ºC and 10-17 ml CO2/kg.hr at 20ºC) for mandarins and oranges Skin Staining is a Preharvest Disorder Rind Staining Following Skin Abrasions Detection of Wounds on Lemons Oil Spotting on Lemons ... 20- 25° 1-2 air changes/hr Duration of degreening required depends on maturity stage (amount of chlorophyll) in the skin of citrus fruits Washing -Dumping- Surface Drying Waxing and Fungicide Application ... Drying Sorting By Quality Stamping Individual Fruits Machine Vision (Electronic) Sizer Volumetric Sizer Enclosure Within Which Fruits are Sorted Under UV Light to Eliminate Defects Sorting Into...
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Tài liệu Computational Biology & Bioinformatics: A Gentle Overview ppt
... own protein-making machinery can go wrong and produce P1’ instead of P1, causing disease Identifying a disease and bringing out an effective drug into the market could take anywhere from 10–15 ... Developing medicinal plant data base × Analysing gene expression images √ Using computers to identify finger prints × Using computers in process control in bio-technology industries × Identifying ... could interact and form a complex, in which two molecules are bound together into a new one, with one of the good proteins, say P1, thereby inhibiting it from its routine activities and causing...
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Tài liệu Measuring Immunity: Basic Biology and Clinical Assessment doc
... diversity in NK and NKT cells Rachel Allen and Anne Cooke Section II Serologic Assays Handling sera and obtaining fluid from different compartments Dmitriy W Gutkin, Diana Metes and Michael R Shurin ... Acute-phase proteins and inflammation Chau-Ching Liu and Joseph M Ahearn 11 Complement in health and disease Chau-Ching Liu and Joseph M Ahearn 12 Immunoglobulin titers and immunoglobulin subtypes ... tapasin and TAP, which have specific roles in facilitating peptide loading (Sadasivan et al., 1996; Zarling et al., 2003) Tapasin binds to class I heavy chains via residues in the ␣2 and ␣3 domains...
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Tài liệu Báo cáo khoa học: Computational processing and error reduction strategies for standardized quantitative data in biological networks doc
... use the erythropoietin receptor (EpoR)-induced activation of ERK1 in the hematopoietic suspension cell line, BaF3-hemaglutinin-tagged (HA)-EpoR, and the interleukin-6 (IL-6)-induced activation ... protein (MAP)-kinase family members, ERK1 and ERK2, in cytoplasmic lysates from BaF3-HA-EpoR cells, was determined by analyzing, in parallel, a serial dilution of purified recombinant ERK2 protein ... protein of interest has to be used to distinguish blotting error from the true protein concentration The levels of pERK1 and ERK1 were normalized with a smoothing spline applied to the bActin signal...
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Optical Interferometry for Biology and Medicine docx
... is the internal angle in the film and y0 is the internal angle in the cavity For standing-wave interferometers it is important to keep in mind that DhOPL is not only a function of index and thickness, ... to cross and interfere This class includes the Michelson and Mach–Zehnder interferometers It also includes the Fabry–Perot interferometer that works in an in- line” configuration 1.2 Interferometer ... crossing or combining (amplitude-splitting) Wavefrontsplitting configurations include Young’s double-slit interference (Fig 1.11) and diffraction generally Amplitude-splitting interferometers include...
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Computational Complexity and Information Asymmetry in Financial Products pptx
... easy to hedge against (e.g using an industry price index), thus extracting from each asset a random variable that is independent for assets in different industries or markets In any case, our ... difficulty of pricing arbitrary derivatives and the possible increase in asymmetry of information via derivatives While this “factoring derivative” is obviously far removed from anything used in current ... (ignoring for now the issue of how the seller can be restrained from later selling the junior tranche) We will show below that this assumption is incorrect in our setting, and even tranching is...
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Báo cáo khoa học: "COMPUTATIONAL PLEXITY AND LEXICAL FUNCTIONAL GRAMMAR" docx
... whether a string is in an LFG language takes polynomial time (that is, takes time n k on a deterministic "rulingmachine, for some integer k, where n = the length of the input string) Then since the ... job of checking the string for well-formedn,.-~s involves finding a derivation tree for the suing, solving the ancillary co-oecurrencc equations (by feature propagatiun), and chetking for functional ... choose between " r " and "F" assignments to literais One includes in the context-free base grammar two productions deriving eacJa terminal item Xi, namely, XiT=~X i and XiF'mpX i, corresponding...
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Cell biology and plamid
... nucleus and the plasma membrane interior space is called the Functions: -circulation and transport -storage of proteins and minerals -synthesis of lipids, carbohydrates, and proteins -A large ... Ribosomes - protein synthetic machinery • two subunits - large and small - each made of protein and ribosomal RNA (rRNA) • subunits associate when they are synthesizing proteins • protein synthesis ... (cell center) found in animals and most protists the centrioles are involved in the production of microtubules microtubules have many functions including moving chromosomes during cell division...
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Biotechnology of Microbial Xylanases: Enzymology, Molecular Biology and Application
... to the pyranoside ring as in cellulose and mannan has a dramatic effect on the intra and inter chain hydrogen bonding interactions Intra-chain hydrogen bonding is occurring in unsubstituted xylan ... can accommodate only a single cellulose or xylan chain probably via a combination of stacking interactions and hydrogen bonding Cellulose-binding domains (CBD) are found in several xylanases (110Black ... cleaving the ester linkages between lignin and hemicelluloses If used along with xylanases and other xylan degrading enzymes in biobleaching of pulps the esterases could partially disrupt and...
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Papaya biology and biotechnology
... kinetin, then somatic embryos on MS containing 0-0.25 àM IAA and 5.0-10 àM kinetin, and subsequently regenerated plantlets Arora and Singh (1978a) advanced this finding by also inducing roots in ... uniformity and percentage of seedling emergence Bhattacharya and Khuspe (2001) did extensive tests on the differences between seed germination in vitro and in vivo in 10 cultivars, and their main findings ... consist mostly of water and carbohydrate, low in calories and rich in natural vitamins and minerals, particularly in vitamins A and C, ascorbic acid and potassium (Chan and Tang 1979; Table 3)...
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Nanotechnology for Biology and Medicine docx
... the ECM include (1) structural proteins, such as collagen and elastin; (2) adhesion proteins, such as fibronectin and laminin; (3) soluble growth factors and cytokines; (4) proteoglycans; and (5) ... can bind to the major ECM proteins (fibronectin, collagen, laminin, vitronectin, to name just a few) and mediate the receptor–ligand binding interactions Structure and Biology of the Cellular Environment: ... building blocks of life Nanoengineering is today putting a lot of effort in combining old, well-known chemical methods with new systems, even looking for inspiration from nature in bio-inspired...
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HERONS, EGRETS AND BITTERNS Their biology and conservation in Australia docx
... or inscribed wing tags have been used to gather more information Bands in different colour combinations are visible at a distance and distinguish the banding site, year of banding and may even ... are found in large numbers in Papua New Guinea and Indonesia during the dry winter period These movements are quite regular and are driven by the seasonal drying out of inland wetlands There ... feeding Peering Foot stirring Foot raking Foot paddling Hovering Dipping Foot dragging Plunging Diving Rob nests Piracy Feed at night Feed during day Wing flicking Canopy feeding Black Aust ralas...
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