Lecture AP Biology Chapter 26 Phylogeny and the tree of life

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Lecture AP Biology  Chapter 26 Phylogeny and the tree of life

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This chapter explain the justification for taxonomy based on a PhyloCode; explain the importance of distinguishing between homology and analogy; distinguish between the following terms: monophyletic, paraphyletic, and polyphyletic groups; shared ancestral and shared derived characters; orthologous and paralogous genes; define horizontal gene transfer and explain how it complicates phylogenetic trees.

1 Contrast adaptive radiation vs convergent evolution? Give an example of each What is the correct sequence from the most comprehensive to least comprehensive taxon? In a population of 500 rabbits, 320 are homozygous dominant for brown coat color (BB), 160 are heterozygous (Bb), and 20 are homozygous white (bb) a What are the frequencies of the alleles (B and b)? b What are the frequencies of the different genotypes (BB, Bb, and bb)? Chapter 26 Phylogeny and the Tree of Life What you need to know: • The taxonomic categories and how they indicate relatedness • How systematics is used to develop phylogenetic trees • The three domains of life including their similarities and their differences Systematics: classifying organisms and determining their evolutionary relationships Taxonomy (classification) Systematics Phylogenetics (evolutionary history) Tools used to determine evolutionary relationships: Fossils Morphology (homologous structures) Molecular evidence (DNA, amino acids) Who is more closely related? Animals and fungi are more closely related than either is to plants Taxonomy: science of classifying and naming organisms • Binomial nomenclature (Genus species) Naming system developed by Carolus Linnaeus REMEMBER!! •Dear King Philip Came Over For Good Spaghetti •Dear King Philip Crossed Over Five Great Seas •Dear King Philip Came Over From Germany Stoned •Your own??? Phylogenetic Tree • Branching diagram that shows evolutionary history of a group of organisms Activity: Constructing a Cookie Phylogenetic Tree Living (extant) species Common ancestor (fossil) Extant species Common ancestor Example of a Cookie Tree • Clade = group of species that includes an ancestral species + all descendents • Shared derived characteristics are used to construct cladograms Turtle Leopard Hair Salamander Amniotic egg Tuna Lamprey Lancelet (outgroup) Cladogram Four walking legs Hinged jaws Vertebral column Monophyletic, paraphyletic, and polyphyletic groups Constructing a phylogenetic tree A indicates a character is absent; a indicates that a character is present Branch lengths can represent genetic change Branch lengths can indicate time Draw a phylogenetic tree based on the data below Draw hatch marks on the tree to indicate the origin(s) of each of the characters Answer: Various tree layouts Circular (rooted) tree Unrooted tree Rooted tree • Principle of maximum parsimony: parsimony use simplest explanation (fewest DNA changes) for tree – “keep it simple” • Molecular clocks: some regions of DNA appear to evolve at constant rates ▫ Estimate date of past evolutionary events ▫ Eg Origin of HIV infection in humans= 1930’s Tree of Life • Domains: Bacteria, Archaea, Eukarya SYSTEMATICS e focus s on phylogeny Biological diversity taxonomy cladistics classification Identification of species binomial Genus, species D K P C O F G S Homologous similarities fossils molecular morphology .. .Chapter 26 Phylogeny and the Tree of Life What you need to know: • The taxonomic categories and how they indicate relatedness • How systematics is used to develop phylogenetic trees • The. .. phylogenetic tree based on the data below Draw hatch marks on the tree to indicate the origin(s) of each of the characters Answer: Various tree layouts Circular (rooted) tree Unrooted tree Rooted tree. .. develop phylogenetic trees • The three domains of life including their similarities and their differences Systematics: classifying organisms and determining their evolutionary relationships Taxonomy

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  • Slide 1

  • Chapter 26

  • What you need to know:

  • Systematics: classifying organisms and determining their evolutionary relationships

  • Slide 5

  • Taxonomy: science of classifying and naming organisms

  • Slide 7

  • Phylogenetic Tree

  • Slide 9

  • Activity: Constructing a Cookie Phylogenetic Tree

  • Slide 11

  • Slide 12

  • Slide 13

  • Slide 14

  • Monophyletic, paraphyletic, and polyphyletic groups

  • Constructing a phylogenetic tree

  • Branch lengths can represent genetic change

  • Branch lengths can indicate time

  • Draw a phylogenetic tree based on the data below. Draw hatch marks on the tree to indicate the origin(s) of each of the 6 characters.

  • Answer:

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