... function Figure cycle genes Modeling Fkh2p-Mcm1p cooperativity improves the ability to identify cellModeling Fkh2p-Mcm1p cooperativity improves the ability to identify cellcycle genes Scores for ... by Ndt80p), but it does a poor job of identifying genes that are regulated by Ndt80p only (not shown) Conversely, the Ndt80p PWM does a poor job of identifying genes that are regulated only by ... intrinsic binding affinity of the dimer, Ka,XY,i,j, is the product of the binding constants of the two proteins, X and Y, for their respective sites, i and j Thus: Ka,eff,XY,i,j = κC,i,j·Ka,X ,Y, i,j...