Báo cáo khoa học: A DmpA-homologous protein from Pseudomonas sp is a dipeptidase specific for b-alanyl dipeptides Hidenobu Komeda and Yasuhisa Asano docx
... 2005 FEBS
A DmpA-homologous protein from Pseudomonas sp. is a
dipeptidase specific for b -alanyl dipeptides
Hidenobu Komeda and Yasuhisa Asano
Biotechnology Research Center, Toyama Prefectural University, ... L-Ala-(Gly)
2
(L-Ala)
2
, L-Ala-D-Ala, L-Ala-D-Ala-L-Ala,
DL-Ala-DL-Asn, DL-Ala-DL-Ile, DL-Ala-DL-Leu, DL-Ala-DL-Met, DL-Ala-
DL-Phe, DL-Ala-DL-Ser, DL-Al...
... extracellular ligands of the RPTPs in
the neuromuscular system. For example, it is known
that PTPd and an isoform of LAR can interact
homophilically [39] and that LAR can also bind
heterophilically ... black dots, protease cleavage sites. (B) SDS ⁄ PAGE
separation of FN3d–AP purified from conditioned media using anti-placental alkaline phosphatase (PLAP) agarose. (C) SDS ⁄ PAGE and...
... phosphorylases from hyperthermophilic
Archaea require a CXC motif for stability and folding
Giovanna Cacciapuoti, Iolanda Peluso, Francesca Fuccio and Marina Porcelli
Department of Biochemistry ... was analyzed by catalytic
activity measurements performed under standard condi-
tions.
Reactivation assay of SsMTAPII, PfPNP and their
CXC-lacking mutants
The activity of SsCSC and Pf...
... sequences,
the ISP of P. denitrificans was listed as a potential sub-
strate for what was later named the Tat pathway [10].
To substantiate this assignment, the P. denitrificans
ISP was initially analysed ... permits substantial
ISP transport. Comparative sequence analysis reveals characteristics com-
mon to Tat signal peptides in several bacterial ISPs; however, there are
distinctive featu...
... Kazusa
DNA Research Institute), using primers Dps-Te1 (5¢-CA
AAGGAGACT
CATATGAGTGCAACAACTAC-3¢) and
Dps-Te2 (5¢-CTACAA
AAGCTTAATCCGCAACTAACT
GAC-3¢). The NdeI and Hin dIII restriction sites are ... 10761
E-mail: andrea.ilari@uniroma1.it
Database
The atomic coordinates and structure fac-
tors have been deposited in the Protein
Data Bank, Research Laboratory for Struc-
tural Bioinform...
... Japanese medaka (Oryz-
ias latipes; GenBank: CAL64054), Japanese seabass
(Lateolabrax japonicus) and Japanese flounder (Para-
lichthys olivaceus) [18] have been described and com-
pared (for a ... Boukouvala E, Panagi-
otidis CH, Papadopoulos AI, Sklaviadis T & Krey G
(2007) Molecular characterization of a cDNA from the
gilthead sea bream (Sparus aurata) encoding a fish prion...
... text and calculate
recall and precision for a comparison.
7. Applications
Identification of noun phrases in texts is useful for many
applications. Anaphora resolution (Hirst, 1981) is to ... Extracting Noun Phrases from Large-Scale Texts:
A Hybrid Approach and Its Automatic Evaluation
Kuang-hua Chen and Hsin-Hsi Chen
Department of Computer Science and Information...
... 177
A
AO55930 PSEDATVVKRLLAAGATVVGKSVCEDLCFSGASFTSASGAVKNPWDLARNAGGSSSGSAV 177
ZP_00124054 PSEDATVVKRLLAAGATVIGKSVCEDLCFSGASFTSATGAVKNPWDLTRNAGGSSSGSAV 177
BAC99079 PSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDPQREAGGSSGGSAA ... ammonia and transformation of
the planar thioimidate to a planar thiol acyl-enzyme
through a tetrahedral intermediate. Addition of a sec-
ond water molec...
... total electric charge was +6 for 5pah and )16
for 2toh, as 2toh comprises the catalytic core domain and
the tetramerization domain. BH
4
is uncharged. The aroma-
tic amino acids phenylalanine and ... groups. Two alter-
native conformations, rotated 180° around an imaginary
iron–catecholamine axis, were found for DA and
L
-DOPA
in PAH and for DA in TH. Electrostatic forces...